Movement disorders in oncology: From clinical features to biomarkers

Background: the study of movement disorders associated with oncological diseases and anticancer treatments highlights the wide range of differential diagnoses that need to be considered. In this context, the role of immune-mediated conditions is increasingly recognized and relevant, as they represent treatable disorders. Methods: we reappraise the phenomenology, pathophysiology, diagnostic testing, and treatment of movement disorders observed in the context of brain tumors, paraneoplastic conditions, and cancer immunotherapy, such as immune-checkpoint inhibitors (ICIs). Results: movement disorders secondary to brain tumors are rare and may manifest with both hyper-/hypokinetic conditions. Paraneoplastic movement disorders are caused by antineuronal antibodies targeting intracellular or neuronal surface antigens, with variable prognosis and response to treatment. ICIs promote antitumor response by the inhibition of the immune checkpoints. They are effective treatments for several malignancies, but they may cause movement disorders through an unchecked immune response. Conclusions: movement disorders due to focal neoplastic brain lesions are rare but should not be missed. Paraneoplastic movement disorders are even rarer, and their clinical-laboratory findings require focused expertise. In addition to their desired effects in cancer treatment, ICIs can induce specific neurological adverse events, sometimes manifesting with movement disorders, which often require a case-by-case, multidisciplinary, approach

Evaluating Legacy System Migration Technologies through Empirical Studies

We present two controlled experiments conducted with master students and practitioners and a case study conducted with practitioners to evaluate the use of MELIS (Migration Environment for Legacy Information Systems) for the migration of legacy COBOL programs to the web. MELIS has been developed as an Eclipse plug-in within a technology transfer project conducted with a small software company [16]. The partner company has developed and marketed in the last 30 years several COBOL systems that need to be migrated to the web, due to the increasing requests of the customers. The goal of the technology transfer project was to define a systematic migration strategy and the supporting tools to migrate these COBOL systems to the web and make the partner company an owner of the developed technology. The goal of the controlled experiments and case study was to evaluate the effectiveness of introducing MELIS in the partner company and compare it with traditional software development environments. The results of the overall experimentation show that the use of MELIS increases the productivity and reduces the gap between novice and expert software engineers

Use of DHPLC for rapid screening of recombinant clones.

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simple version of megaprimer pcr for site directed mutagenesis

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In-situ monitoring of defects in extrusion-based bioprinting processes using visible light imaging

Tissue engineering techniques are central for the development of biomedical scaffolds, which are primarily employed in the biofabrication of various artificial human tissue and organ models. Bioprinting is a new technique of creating tissue constructs that can sustain cell proliferation. The development of printing techniques proceeds together with the development of the biomaterials to be printed, which is why studying the printability of these specific biomaterials must be explored. An appropriate hydrogel used as bioink should have numerous rheological, mechanical, and biological properties for producing appropriate tissue constructs. However, reaching the right trade-off between a desirable bioactivity and high printability is challenging, and despite numerous optimization studies for different materials, printing defects often occur during printing. Herein, methods are proposed to automatically identify these drifting processes in commonly used geometries and how they affected subsequent layers, as well as printing defects within each layer. Several structures were printed with standard commercial bioink as proof of concept. The constructs were analyzed using optical images from a coaxial camera. The images were then digitally processed to get geometrical data from which patterns of defectology to be monitored were derived. This automation should decrease the time in post-processing characterization of constructs and should provide a standardized tool to compare different bioinks

Personal UV exposure on a ski-field at an alpine site

International audienceMountain sites experience enhanced ambient UV radiation levels due to the concurrent effects of shorter radiation path-length, low aerosol load and high reflectivity of the snow surfaces. This study was encouraged by the possibility to collect data of personal UV exposure in the mountainous areas of Italy, for the first time. Personal UV exposure (expressed in terms of Exposure Ratio, ER) of two groups of volunteers (ski instructors and skiers) at the Alpine site of La Thuile (Valle d'Aosta region, Italy) was assessed using polysulphone dosimetry which was tested in a mountainous snow-covered environment. In addition measurements of biological markers of individual response to UV exposure such as skin colorimetric parameters were carried out. It was found that snow and altitude of study site affect calibration curves of polysulphone dosimeters in comparison to a situation without snow. The median ER, taking into account the whole sample, is 0.60 in winter, with a range of 0.29 to 1.46, and 1.02 in spring, ranging from 0.46 to 1.72. There are no differences in exposures across skiers and instructors in spring while in winter skiers experience lower values. UV exposures are not sensitive to the use of sunscreen across instructor/skier group by day or by seasons or by photo-type. With regard to colorimetric parameters, the main result was that both skiers and instructors had on average significantly lower values of L* and b* after exposure i.e. becoming darker but the inappropriate sunscreen use did not reveal any changes in skin colorimetric parameters except in one spring day. In conclusions UV intensities on the ski-fields are often significantly higher than those on horizontal surfaces. Given the high levels of exposure observed in the present study, dedicated public heath messages on the correct sunscreen use should be adopted

Data preparation and interannotator agreement: BioCreAtIvE Task 1B

<p>Abstract</p> <p>Background</p> <p>We prepared and evaluated training and test materials for an assessment of text mining methods in molecular biology. The goal of the assessment was to evaluate the ability of automated systems to generate a list of unique gene identifiers from PubMed abstracts for the three model organisms Fly, Mouse, and Yeast. This paper describes the preparation and evaluation of answer keys for training and testing. These consisted of lists of normalized gene names found in the abstracts, generated by adapting the gene list for the full journal articles found in the model organism databases. For the training dataset, the gene list was pruned automatically to remove gene names not found in the abstract; for the testing dataset, it was further refined by manual annotation by annotators provided with guidelines. A critical step in interpreting the results of an assessment is to evaluate the quality of the data preparation. We did this by careful assessment of interannotator agreement and the use of answer pooling of participant results to improve the quality of the final testing dataset.</p> <p>Results</p> <p>Interannotator analysis on a small dataset showed that our gene lists for Fly and Yeast were good (87% and 91% three-way agreement) but the Mouse gene list had many conflicts (mostly omissions), which resulted in errors (69% interannotator agreement). By comparing and pooling answers from the participant systems, we were able to add an additional check on the test data; this allowed us to find additional errors, especially in Mouse. This led to 1% change in the Yeast and Fly "gold standard" answer keys, but to an 8% change in the mouse answer key.</p> <p>Conclusion</p> <p>We found that clear annotation guidelines are important, along with careful interannotator experiments, to validate the generated gene lists. Also, abstracts alone are a poor resource for identifying genes in paper, containing only a fraction of genes mentioned in the full text (25% for Fly, 36% for Mouse). We found that there are intrinsic differences between the model organism databases related to the number of synonymous terms and also to curation criteria. Finally, we found that answer pooling was much faster and allowed us to identify more conflicting genes than interannotator analysis.</p

Breastfeeding and obesity in Brazilian children

The association between breastfeeding and obesity is inconsistent by the literature. This study aims to assess whether obesity is associated to occurrence of breastfeeding and to duration of total and exclusive breastfeeding in Brazilian children. A cross-sectional study was conducted with 764 children enrolled in public and private schools from Viçosa, Minas Gerais, Brazil. Obesity (outcome variable) was defined as body mass index above the +2 standard deviations score using sex and age specific standards of World Health Organization. Exposure was the occurrence and duration of breastfeeding. Potential confounders were controlled by multiple logistic regression analysis and were divided in two groups: children (gender, age, birth weight, gestational age, order of birth, number of siblings, number of persons in the residence, type of school, physical activity patterns and time watching television) and mothers (age, nutritional status, level of education, weight gain during pregnancy, smokes currently and during the pregnancy). Prevalence of obesity was 10.7%; 6.8% of the children were not breastfed and 59.0% did not receive exclusive breastfeeding. After adjustment for confounding variables by logistic regression analysis, no statistically significant association was observed between obesity and the occurrence and/or duration of total and exclusive breastfeeding. There was no dose-response effect of duration of breastfeeding on prevalence of obesity. Our results do not support the hypothesis that breastfeeding promotion would reduce obesity in this population. Controversial findings regarding this association by literature indicate a need for further investigations